neurotorchmz#
Neurotorch is a tool designed to extract regions of synaptic activity in neurons tagges with iGluSnFR, but is in general capable to find any kind of local brightness increase due to synaptic activity.
- neurotorchmz.start(edition: Edition = Edition.NEUROTORCH, headless: bool = False, background: bool = False) Session#
Create a new session of Neurotorch. You can access it via the provided Session object returned by this function (only in background mode). In contrast to a session, use neurotorchmz.API if you don’t want Neurotorch to manage your data and only want to access the detection functions.
- Parameters:
edition (Edition) – Choose which edition of Neurotorch you want to launch
headless (bool) – When set to true, the tkinter GUI is not opened. Some functions may not work in headless mode
background (bool) – Controls wether the GUI is running in a different thread. Note that tkinter may raise warnings, which can generally be ignored.
- Returns Session:
A session object to interact with the GUI
- neurotorchmz.start_background(edition: Edition = Edition.NEUROTORCH, headless: bool = False) Session#
Create a new session of Neurotorch. You can access it via the provided Session object returned by this function (only in background mode). In contrast to a session, use neurotorchmz.API if you don’t want Neurotorch to manage your data and only want to access the detection functions.
Note: This function is an alias for start(background=True)
- Parameters:
edition (Edition) – Choose which edition of Neurotorch you want to launch
headless (bool) – When set to true, the tkinter GUI is not opened. Some functions may not work in headless mode
background (bool) – Controls wether the GUI is running in a different thread. Note that tkinter may raise warnings, which can generally be ignored.
- Returns Session:
A session object to interact with the GUI
The core module contains the most important parts of Neurotorch. |
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